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Publications
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The following publications are derived from data generated by or important to the consortium. Links to the supporting project (when public) and the online publication (when available) are provided.
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Publications Inventory
Consortium Publications Abstracts Talks Related Manuscripts
Published
In Press
In Preparation
 68
 4
 34
 		Published 67
 		Published 43
 		Published
In Press
In Preparation
 20
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Publications Derived from Consortium Projects Return to Top
  • Albert Y, Whitehead J, Eldredge L, Carter J, Gao X, and Tourtellotte W, Transcriptional regulation of myotube fate specification and intrafusal muscle fiber morphogenesis; J Cell Biol., 2005, 2; 169:257-68  View Online   Open Project


  • Bassuk AG, Craig D, Jalai A, Mukopadhyay A, Kim F, Charrow J, Gulgu U, Epstein LG, Bowman R, Mclone D, Yagi H, Matsuoka R, Stephan DA, and Kessler J, The genetics of tethered cord syndrome; Am J Mole Gen, 2004, 22;132A(4):450-453


  • Bough, KJ, J Wetherington, B Hassel, JF Pare, J Gawryluk, JG Greene, R Shaw, Y Smith, JD Geiger, R Dingledine, Mitochondrial biogenesis in the anticonvulsant mechanism of the ketogenic diet; Ann. Neurology, 2006, 2; 60:223-35  View Online   Open Project


  • Carlson MR, Pope WB, Horvath S, Braunstein JG, Nghiemphu P, Tso CL, Mellinghoff I, Lai A, Liau LM, Mischel PS, Dong J, Nelson SF, Cloughesy TF., Relationship between survival and edema in malignant gliomas: role of vascular endothelial growth factor and neuronal pentraxin 2.; Clin Cancer Res., 2007, 9; 13:2592-8


  • Carter JH, Lefebvre JM, Wiest DL, Tourtellotte WG, Redundant role for early growth response transcriptional regulators in thymocyte differentiation and survival; J Immunol, 2007, 178; 11:796-805  View Online   Open Project


  • Cha YH, Lee H, Jen JC, Kattah JC, Nelson SF, Baloh RW., Episodic vertical oscillopsia with progressive gait ataxia: clinical description of a new episodic syndrome and evidence of linkage to chromosome 13q.; J Neurol Neurosurg Psychiatry., 2007, 11; 78:1273-5


  • Cobos I, Borello U, Rubenstein JLR., Dlx transcription factors promote migration through repression of axon and dendrite growth.; Neuron, 2007; 54:873-888


  • Coon KD, Dunckley T, and Stephan DA, Biomarker identification in neurologic disease to facilitate improved diagnostics and therapeutics; Exp Rev Mol Diag, 2004, 3:4:361-375


  • Craig DW, Huentelman MJ, Hu-Lince D, Zismann VL, Kruer MC, Lee AM, Puffenberger EG, Pearson JM, Stephan DA, Identification of disease causing loci using an array-based genotyping approach on pooled DNA; BMC Genomics, 2005, 138; 6


  • Craig,DW and Stephan DA, Applications of Whole-Genome High-Density SNP Genotyping; Exp Rev Mol Diag, 2005, 2; 5:159-170  View Online


  • Cudrici C, Ito T, Zafranskaia E, Weerth S, Chen HH, Gherman A, Soloviova K, Rus V, Raine CS & Rus H., Complement C5 regulates insulin-like growth factors binding proteins in chronic experimental allergic encephalomylitis; Proceedings of 13th International Congress of Immunology , 2007:259-264


  • Dobrin S and Stephan D, Integrating microarrays into disease-gene identification strategies; Expert Rev Mol Diagn, 2003, 3:375-85  View Online


  • Donarum EA, Halperin RF, Stephan DA, Narayanan V, Cognitive dysfunction in NF1 knock-out mice may result from altered vesicular trafficking of APP/DRD3 complex; BMC Neuroscience, 2006; 7:22  View Online   Open Project


  • Donarum EA, Stephan DA, Larkin K, Murphy EJ, Gupta M, Senephansiri H, Switzer RC, Pearl PL, Snead OC, Jakobs C, Gibson KM, Expression profiling reveals multiple myelin alterations in murine succinate semialdehyde dehydrogenase deficiency; J Inherit Metab Dis, 2006, 1; 29:143-56  View Online   Open Project


  • Dunckley T, Beach TG, Ramsey KE, Grover A, Mastroeni D, Walker DG, Lafleur BJ, Coon KD, Brown KM, Caselli R, Kukull W, Higdon R, McKeel D, Morris JC, Hulette C, Schmechel D, Reiman EM, Rogers J, Stephan DA., Gene expression correlates of neurofibrillary tangles in Alzheimer's disease; Neurobiol Aging, 2005  View Online


  • Dunckley T, Coon, KD and Stephan DA, Discovery and development of biomarkers of neurological disease; Drug Discovery Today, 2005, 5; 10:326-34  View Online


  • Fiala M, Liu PT, Espinosa-Jeffrey A, Rosenthal MJ, Bernard G, Ringman JM, Sayre J, Zhang L, Zaghi J, Dejbakhsh S, Chiang B, Hui J, Mahanian M, Baghaee A, Hong P, Cashman J., Innate immunity and transcription of MGAT-III and Toll-like receptors in Alzheimer's disease patients are improved by bisdemethoxycurcumin.; Proc Natl Acad Sci U S A. , 2007, 104; 31:12849-54  View Online


  • Freije WA, Castro-Vargas FE, Fang Z, Horvath S, Cloughesy T, Liau LM, Mischel PS, Nelson SF, Gene expression profiling of gliomas strongly predicts survival; Cancer Research, 2004, 18; 64:6503-10  View Online   Open Project


  • Frye, C.A., Walf, A.A., Membrane actions of progestins at dopamine type 1-like and GABA(A) receptors involve downstream signal transduction pathways.; Steroids, 2008


  • Fukuhara C and Tosini G. , Analysis of daily and circadian gene expression in the rat pineal gland; Neuroscience Research , 2007:1-7   Open Project


  • Ghiani CA, Beltran-Parrazal L, Sforza DM, Malvar JS, Seksenyan A, Cole R, Smith DJ, Charles A, Ferchmin PA, de Vellis J., Genetic program of neuronal differentiation and growth induced by specific activation of NMDA receptors.; Neurochemical Research , 2007, 2; 32:363-76  View Online


  • Ghiani CA, Lelievre V, Beltran-Parrazal L, Sforza DM, Malvar J, Smith DJ, Charles AC, Ferchmin PA, de Vellis J, Gene expression is differentially regulated by neurotransmitters in embryonic neuronal cortical culture; J Neurochem, 2006, Suppl 1; 97:35-43  View Online   Open Project


  • Gong J, Zhao Y, Abdel-Fattah R, Amos S, Xiao A, Lopes MBS, Hussaini IM &Laws ER. , Matrix metalloproteinase-9, a potential biological marker in invasive pituitary adenomas; Pituitary , 2007   Open Project


  • Greene JG, Dingledine R, and Greenamyre JT, Gene expression profiling of rat midbrain dopamine neurons: implications for selective vulnerability in parkinsonism; Neurobiol Dis, 2005, February:18(1): 19-31   Open Project


  • Hagberga H, Gustavsson M, Mallard C, Vannucci SJ, Johnston MV, Wilson MA, Vascular response to hypoxic preconditioning in the immature brain; J Cereb Blood Flow Metab. , 2007, 5; 27:928-38   Open Project


  • Hu-Lince D, Craig DW, Huentelman MJ, Stephan DA, The Autism Genome Project: goals and strategies; Am J Pharmacogenomics, 2005, 4; 5:233-46


  • Huentelman MJ, Craig DW, Shieh AD, Corneveaux JJ, Hu-Lince D, Pearson JV, Stephan DA, SNiPer: improved SNP genotype calling for Affymetrix 10K GeneChip microarray data; BMC Genomics, 2005, 149; 6  View Online


  • Hussaini IM, Trotter C, Zhao Y, Abdel-Fattah R, Amos S, Xiao A, Agi CU, Redpath GT, Fang Z, Leung GKK, Lopes MBS & Laws ER, Matrix metalloproteinase-9 is differentially expressed in nonfunctioning invasive and noninvasive pituitary adenomas and increases invasion in human pituitary adenoma cell line; AJP, 2007, 1; 170:356-365   Open Project


  • Itoh Y, Melamed E, Yang X, Kampf K, Wang S. Yehya N, Van Nas A, Replogle K, Band MR, Clayton DF, Schadt EE, Lusis AJ, Arnold AP, Dosage compensation is less effective in birds than in mammals; Journal of Biology, 2007, 1; 6:2  View Online   Open Project


  • Jevsek M, Jaworski A, Polo-Parada L, Kim N, Fan J, Landmesser LT, Burden SJ, CD24 is expressed by myofiber synaptic nuclei and regulates synaptic transmission; Proc Natl Acad Sci, 2006, 16; 103:6374-9  View Online   Open Project


  • Kidd M, Modlin IM, Eick GN, Camp RL, Mane SM., Role of CCN2/CTGF in the proliferation of Mastomys enterochromaffin-like cells and gastric carcinoid development.; Am J Physiol Gastrointest Liver Physiol. , 2007, 1; 292:191-200  View Online


  • Koh S, Chung H, Xia H, Mahadevia A, Song Y, Environmental enrichment reverses the impaired exploratory behavior and altered gene expression induced by early-life seizures; J Child Neurology, 2005, 10; 20:796-802  View Online   Open Project


  • Koh S, Magid R, Chung H, Stine CD, & DN Wilson. , Depressive behavior and selective down-regulation of serotonin receptor expression after early-life seizures: reversal by environmental enrichment.; Epilepsy & Behavior. , 2007; 10:26-31


  • Learn CA, Fecci PE, Schmittling RJ, Xie W, Karikari I, Mithell DA, Archer GE, Wei Z, Dressman H, & Sampson JH. , Profiling of CD4+, CD8+, and CD4+CD25+CD45RO+FoxP3+ T-cells in patients with malignant glioma reveals differential expression of the immunologic transcriptome compared to T-cells from healthy volunteers.; Clinical Cancer Research, 2006, 12:7306-7315


  • Learn CA, Grossi PM, Schmittling RJ, Xie W, Mitchell DA, Karikari I, Wei Z, Dressman H, & Sampson J. , Genetic analysis of intracranial tumors in a murine model of glioma demonstrate a shift in gene expression in response to host immunity.; Journal of Neuroimmunology, 2007, 182:63-72


  • Lee H, Jen JC, Cha YH, Nelson SF, Baloh RW., Phenotypic and Genetic Analysis of a Large Family With Migraine-Associated Vertigo.; Headache, 2007


  • Lee TS, Mane S, Eid T, Zhao H, Lin A, Guan Z, Kim JH, Schweitzer J, King-Stevens D, Weber P, Spencer SS, Spencer DD, de Lanerolle NC., Gene expression in temporal lobe epilepsy is consistent with increased release of glutamate by astrocytes.; Mol Med, 2007, 1; 13:1-13  View Online


  • Liang WS, Dunckley T, Beach TG, Grover A, Mastroeni D, Ramsey K, Caselli RJ, Kukull WA, McKeel D, Morris JC, Hulette CM, Schmechel D, Reiman EM, Rogers J, Stephan DA., Altered neuronal gene expression in brain regions differentially affected by Alzheimer's disease: a reference data set.; Physiol Genomics., 2008, 2; 33:240-56   Open Project


  • Liang WS, Dunckley T, Beach TG, Grover A, Mastroeni D, Walker DG, Caselli RJ, Kukull WA, McKeel D, Morris JC, Hulette C, Schmechel D, Alexander GE, Reiman EM, Rogers J, Stephan DA , Gene expression profiles in anatomically and functionally distinct regions of the normal aged brain; Physiological Genomics, 2007, 3; 28:311-322   Open Project


  • Liang WS, Reiman EM, Valla J, Dunckley T, Beach TG, Grover A, Niedzielko TL, Schneider LE, Mastroeni D, Caselli R, Kukull W, Morris JC, Hulette CM, Schmechel D, Rogers J, Stephan DA., Alzheimer's disease is associated with reduced expression of energy metabolism genes in posterior cingulate neurons.; Proc Natl Acad Sci U S A., 2008, 11; 105:4441-6  View Online   Open Project


  • Liu Y, Brandon M, Navathe S, Dingledine R, Ciliax BJ, Text mining functional keywords associated with genes; Medinfo. 2004, 2004, part 1; 11:292-296  View Online


  • Liu Y, Ciliax BJ, Borges K, Dasigi V, Ram A, Navathe SB, Dingledine R, Comparison of two schemes for automatic keyword extraction from MEDLINE for functional gene clustering; Proc IEEE Comput Syst Bioinform Conf. 2004, 2004, 1; 1:394-404  View Online


  • Liu Y, Navathe S, Civera J, Dasigi, V., Ram A, Ciliax BJ, and Dingledine R, Text mining biomedical literature for discovering gene-to-gene relationships: a comparative study of algorithms; IEEE Transactions on Computational Biology and Bioinformatics, 2005, 1; 2:62-76


  • Liu Y, Navathe SB, Pivoshenko A, Dasigi V, Dingledine R, Ciliax BJ, Text Analysis of MEDLINE for Discovering Functional Relationships among Genes: Evaluation of Keyword Extraction Weighting Schemes; Int J Data Min Bioinform., 2006, 1; 1:88-110


  • Lobsiger C, Boillée S, & Cleveland DW. , Toxicity from different SOD1 mutants dysregulates the complement system and the neuronal regenerative response in ALS motor neurons; PNAS, 2007, 18; 104:7319-7326   Open Project


  • Melamed E, Arnold AP., Regional differences in dosage compensation on the chicken Z chromosome.; Genome Biol., 2007, 9; 8   Open Project


  • Mitchell, SA, Brown KM, Henry MM, Reaman GH, Lafleur B, and Stephan DA, Inter-platform comparability of microarrays in acute lymphoblastic leukemia; BMC Genomics, 2004, 1:5:71


  • Nakano I, Masterman-Smith M, Saigusa K, Paucar AA, Horvath S, Shoemaker L, Watanabe M, Negro A, Bajpai R, Howes A, Lelievre V, Waschek JA, Lazareff JA, Freije WA, Liau LM, Gilbertson RJ, Cloughesy TF, Geschwind DH, Nelson SF, Mischel PS, Terskikh AV, Kornblum HI., Maternal embryonic leucine zipper kinase is a key regulator of the proliferation of malignant brain tumors, including brain tumor stem cells.; J Neurosci Res., 2008, 1; 86:48-60  View Online


  • Palmer AA, Verbitsky M, Suresh R, Kamens HM, Reed CL, Li N, Burkhart-Kasch S, McKinnon CS, Belknap JK, Gilliam TC, Phillips TJ, Gene expression differences in mice divergently selected for methamphetamine sensitivity; Mamm Genome, 2005, 5; 16:291-305  View Online   Open Project


  • Pan JZ, Wei, H, Hecker, JG, Tobias, J, Eckenhoff, RG, and Eckenhoff MF, Rat brain DNA transcript profile of volatile anesthetic exposure; PGEN, 2005   Open Project


  • Petito CK, Torres-Munoz JE , F. Zielger F and McCarthy M, Brain accumulation of cytotoxic T lymphocytes in AIDS patients with HIV-1 encephalitis; J NeuroVirol, 2006; 12:272-283   Open Project


  • Petito CK, Torres-Muñoz JE, Zielger F, McCarthy M, Brain CD8+ and cytotoxic T lymphocytes are associated with, and may be specific for, human immunodeficiency virus type 1 encephalitis in patients with acquired immunodeficiency syndrome; J Neurovirol, 2006, 4; 12:272-83   Open Project


  • Pfisterer WK, Hank NC, Preul MC, Hendricks WP, Pueschel J, Coons SW, and Scheck AC, Diagnostic and Prognostic Significance of Genetic Regional Heterogeneity in Meningiomas; Neuro-Oncology, 2004, 6(4):290-9   Open Project


  • Ploski JE, Newton SS, & Duman RS., Electroconvulsive seizure-induced gene expression profile of the hippocampus dentate gyrus granule cell layer.; J. Neurochem. , 2006, 4; 99:1122-32  View Online


  • Puffenberger EG, Lince DH, Parod JM, Conway AR, Stafford PN, Donarum EA, Craig DW, Strauss KA, Dobrin SE, Dunckley T, Cardenas JF, Melmed KR, Wright CA, Morton DH, Flynn CR, and Stephan DA, Mapping of sudden infant death with dysgenesis of the testes syndrome (SIDDT) by a SNP genome scan and identification of TSPYL loss of function; Proc Natl Acad Sci, 2004, 101(32):11689-11694


  • Qiao X, Lu J, Hofmann SL. , Gene Expression Profiling in a Mouse Model of Infantile Neuronal Ceroid Lipofuscinosis Reveals Upregulation of Immediate Early Genes and Mediators of the Inflammatory Response; BMC Neuroscience, 2007, 95; 16   Open Project


  • Rand M, Bland C, & Bond J. , Methylmercury activates Enhancer-of-Split and Bearded complex genes independent of the Notch receptor; Toxicol Sci., 2008  View Online   Open Project


  • Seal JL, Gornick MC, Gogtay N, Shaw P, Greenstein DK, Coffey M, Gochman PA, Stromberg T, Chen Z, Merriman B, Nelson SF, Brooks J, Arepalli S, Wavrant-De Vrieze F, Hardy J, Rapoport JL, & Addington AM. , Segmental uniparental isodisomy on 5q32-qter in a patient with childhood-onset schizophrenia; J. Med. Genet. , 2006; 10  View Online


  • Shilling, P.D., Saint Marie, R.L., Shoemaker, J.M., Swerdlow, N.R., Strain differences in the gating-disruptive effects of apomorphine: Relationship to gene expression in nucleus accumbens signaling pathways.; Biological Psychiatry, 2008, 8; 63:748-58   Open Project


  • Strauss KA, Puffenberger EG, Craig DW, Panganiban CB, Lee AM, Hu-Lince D, Stephan DA, Morton DH, Genome-wide SNP arrays as a diagnostic tool: clinical description, genetic mapping, and molecular characterization of Salla disease in an Old Order Mennonite population; Am J Med Genet A, 2005, 3; 138:262-7  View Online


  • Strauss KA, Puffenberger EG, Huentelman MJ, Gottlieb S, Dobrin SE, Parod JM, Stephan DA, Morton DH, Recessive symptomatic focal epilepsy and mutant contactin-associated protein-like 2; N Engl J Med, 2006, 13; 354:1370-7  View Online


  • Tanis KQ, Duman RS, Newton SS., CREB binding and activity in brain: regional specificity and induction by electroconvulsive seizure.; Biological Psychiatry, 2008, 7; 63:710-20


  • Wada K, Howard JT, McConnell P, Lints T, Rivas MV, Whitney O, Horita H, Patterson MA, White SA, Scharff C, Heasler S, Zhao S, Sakaguchi H, Hagiwara M, Shiraki T, Hirozane-Kishikawa T, Skene P, Hayashizaki Y, Carninci P, Jarvis ED. , A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. ; Proc. Natl. Acad. Sci., 2006; 103:15212-15217


  • Walsh T, McClellan JM, McCarthy SE, Addington AM, Pierce SB, Cooper GM, Nord AS, Kusenda M, Malhotra D, Bhandari A, Stray SM, Rippey CF, Roccanova P, Makarov V, Lakshmi B, Findling RL, Sikich L, Stromberg T, Merriman B, Gogtay N, Butler P, Eckstrand K, Noory L, Gochman P, Long R, Chen Z, Davis S, Ba, Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia ; Science, 2008  View Online


  • Wang X, Blagden C, Fan J, Nowak SJ, Taniuchi I, Littman DR, Burden SJ, Runx1 prevents wasting, myofibrillar disorganization, and autophagy of skeletal muscle; Genes and Development, 2005, 14; 19:1715-22  View Online   Open Project


  • Wilson DN, Chung H, Elliot R, Bremer D, George D. Koh S, Microarray analysis of postictal transcriptional regulation of neuropeptides; J Mol Neurosci, 2005, 3; 25:285-98  View Online   Open Project


  • Zhao X, Pearson KE, Stephan DA, Russell P, Effects of Prostaglandin Analogues on Human Ciliary Muscle and Trabecular Meshwork Cells; Invest Ophthalmol Vis Sci, 2003, 44:1945-1952


  • Zhao X, Ramsey K, Stephan DA and Russell P, Gene and protein expression changes in human trabecular meshwork cells treated with transforming growth factor; Invset Ophthalmol Vis Sci, 2004, 45(11):4023-4034   Open Project


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Publications in Press Return to Top
  • Drozdov I, Kidd M, Gustafsson BI, Mane S, Hauso O, Pfragner R, & Modlin IM. , G-protein coupled receptor pathways and CREB Targets in Small Intestinal Neuroendocrine Tumors. ; Genome Biol., 2008


  • Lynch WJ, Girgenti MJ, Breslin FJ, Newton SS & Taylor JR. , Gene Profiling the Response to repeated Cocaine Self-administration in Dorsal Striatum: A Focus on Circadian Genes. ; Brain Research , 2008


  • McGraw LA, Clark AG, & Wolfner MF. , Post-mating gene expression profiles of female Drosophila melanogaster in response to time and to four male accessory gland proteins; Genetics, 2008


  • Paper W, Kroeber M, Heersink S, Stephan DA, Fuchshofer R, Russell P & Tamm ER., Elevated amounts of myocilin in the aqueous humor of transgenic mice cause significant changes in ocular gene expression


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Publications in Preparation Return to Top
  • Borges K, Shaw R, Greene JG, and Dingledine R, The dentate gyrus plays the main role in hippocampal seizure preconditioning


  • Borges K, Shaw R, and Dingledine R, Biological processes prevailing in different hippocampal cell layers


  • Brown KM, Henry M and Stephan DA, Towards improved diagnostics of pediatric tumors using mRNA expression profiling


  • Brown KM, LaFleur B, Pillai R, Henry M, Pearson K, Mitchell S, King W, Reaman G, and Stephan DA, Microarray analysis of expression associated with disease relapse in acute lymphoblastic leukemia (ALL)


  • Coon KD, Dunckley T, and Stephan DA, A generic research pipeline leading to validated early molecular diagnostics and new therapies for common disorders


  • Craig, DW and Stephan DA, Identification of therapeutic protein targets through high-density SNP genotyping


  • Cudrici C, Zafranskaia E, Weerth S, Chen HH, Gherman A, Rus V, Raine C, Shin ML, Rus H, Effect of Complement C5 on Gene Expression Profile in Experimental Autoimmune Encephalomyelitis (EAE)


  • DelParigi A, Page GP, Allison DB, Beach T, Stephan DA, Reiman EM, and Tataranni PA, Neuroimagenomics for the study of human obesity


  • Gao X and Tourtellotte W, Nerve growth factor (NGF) mediated target gene regulation in human neuroblastoma


  • Gasiorowski JZ, Russell P, Stephan DA, Nealey PF & Murphy CJ. , Topography Induced Gene Expression in Vascular Endothelial Cells


  • Gendleman B, Tavela, E., Brautigam SE, Pearson KE, Liang W, Skene JH, Nelson SF, Stephan, DA.NINDS NIMH Microarray Consortium, Beyond Compliance: Development of Microarray Core Facility Enterprise Software Enables MIAME Verification, turning data into knowledge


  • George, E.D., Elwafi, H., Mane, S., Simen, A.A. , A robust mouse model of chronic behavioral and molecular changes resulting from early life stress.


  • George, E.D., Koga, Y., Raefski, A., Weissman, S., Mane, S., Simen, A.A., Whole-genome analysis of methylation changes associated with long-lasting behavioral changes after early life stress.


  • George, E.D., Koga, Y., Raefski, A., Weissman, S., Mane, S., Simen, A.A. , Genome-wide analysis of CpG methylation in aging prefrontal cortex.


  • Ghiani CA, Beltran-Parrazal L, Lelievre V, Sforza DM, Malvar J, Cole R, Smith DJ, Charles AC, Ferchmin PA, and de Vellis J, Regulation of neurogenesis by neurotransmitter receptor agonists or antagonists in embryonic cortical culture


  • Gustavsson M, Wilson MA, Mallard C, Johnston MV, and Hagberga H, Global gene expression in the developing brain after hypoxic preconditioning: involvement of apoptotic mechanisms; Pediatric Research


  • Henry M, Brown KM and Stephan DA, Improved diagnostic and prognostic accuracy for pediatric tumors using expression profiling and microarray analysis of candidate genes


  • Imamura Kawasawa Y , Johnson MB , Bogdanovic D, Mason CE, Krsnik Z, Gao F, Geschwind DH, State MW, Mane SM, Sestan N, Regional transcriptome of the human brain.; , 2008


  • Li L, Carter J and Tourtellotte W., Transcriptional regulation of the plasticity associated ARC gene by early growth response (Egr) transcription factors


  • Liu X, Kvetnanksy R and, Sabban EL, Comparison of changes in gene expression in adrenal medulla following cold and immobilization stress


  • Liu X, Kvetnanksy R and, Sabban EL, Repertoire of changes in gene expression in rat adrenal medulla with single and repeated immobilization stress; Journal of Neuroscience


  • Long JE, Swan C, Liang W, Cobos I, Potter G, & Rubenstein JL. , The Dlx1&2 and Mash1 Transcription Factors Control Striatal Patterning and Differentiation Through Parallel Pathways.; , 2008


  • Lusardi T, Pignataro G, Simon RP, & Saugstad JA , Regulation of microRNA expression by ischemic preconditioning


  • Marsh, Minarcik, Campbell, Brooks-Kayal, and Golden, Gene Expression Profiling of developing interneurons


  • Martin J, Kim CE, Bair T, Dauer W, Gonzalez-Alegre P., Transcriptional profiling in cellular and animal models of DYT1 dystonia


  • Merriman B, Nelson SF, NINDS NIMH Microarray Consortium, Let the chips fall where they may: a multicenter cross-platform microarray comparison


  • Palmer AA et al, Gene expression in response to treatment with methamphetamine in mouse lines selected from extreme sensitivity to methamphetamine


  • Paris, J.J., Chittur, S., Frye, C.A., Mating upregulates genes involved in steroid biosynthesis, neurogenesis, dopamine, and G-protein activity in naturally-receptive, mated, female rats.


  • Petito CK, Duran M, Shapshak , Torres-Munoz JE, Cortical gene expression profiles in AIDS and HIV encephalitis support the role of CXCR4 and diminished growth factors in HIV-1-related brain injury


  • Ponder CA, Gilliam TC, Palmer AA, Combination of QTL mapping and gene expression to detect genes involved in fear conditioning


  • Stephan DA, Gendleman B, Brautigam SE, Chen J, Pearson KE, Hilmer S, Natale J, Liang W, Skene JH, Nelson SF and the NIH Neuroscience Microarray Consortium, Array portal: web-based management of high throughput expression profiling facilities


  • Thrivikraman KV , Kinkead B, Gernert KM, Nemeroff CB, Plotsky PM, and Owens M, The effect of corticosterone on diurnal differences in rat dorsal raphe gene expression


  • Torres-Munoz, JE, Logvinsky I, Dunnick JE, Petito CK , CK Differential gene expression in Down Syndrome fibroblasts and its relationship to tumor inhibition


  • Tourtellotte W, Whitehead J, and Albert Y., Egr3: A transcriptional regulator that mediates intrafusal muscle fiber fate specification.


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Abstracts Return to Top
  • Wang DY, Ray A, Ergorul C, & Grosskreutz CL, Gene expression profiling in rat retinal ganglion cells after experimental elevation of intraocular pressure; Association for Research in Vision and Ophthalmology , May 2008


  • Correa-Cerros L, Mandell JW., FGF2-stimulated astrocytes upregulate multiple negative feedback regulators of ERK signaling: implications for self regulation of astrogliosis.; Society for Neuroscience Annual Meeting, Annual Meeting , Nov 2007


  • Shilling, P.D., Saint Marie, R.L., Shoemaker, J., Brier, M., Mora, A.B., Ko, D., Neary, A.L., Swerdlow, N.R., Differential gene expression in nucleus accumbens signal transduction pathways in rat strains that exhibit differences in the gating disruptive effects of apomorphine.; Society for Neuroscience , Annual Meeting , Nov 2007


  • Lorincz MT, Zawistowski V, Albin RL, & O’Shea KS. , Expanded CAG repeats augment differentiation of stem cells to neuronal precursors and post mitotic neurons.; American Academy of Neurology , Annual Meeting , Nov 2007


  • J. Martin and P. Gonzalez-Alegre, Gene expression profiling in a cellular model of DYT1 dystonia. ; Society for Neuroscience , Annual Meeting , Nov 2007


  • Perrone-Bizzozero N, Contente T, Stephan DA, & Bolognani F. , Identification of novel targets of the neuronal RNA-binding protein HuD by ribonomics; , Society for Neuroscience Conference , Nov 2007


  • La Gamma EF & Nankova BB, Microarray analyses of butyrate regulated genes: a window to CNS; Society for Neuroscience , Annual Meeting , Nov 2007


  • Frye, C.A., Paris, J.J., Chittur, S., Microarray analyses of midbrain tissues from female mated and unmated rats indicates increased expression of genes involved in steroid biosynthesis, neurogenesis, dopamine receptor, and G-protein activity. ; Society for Neuroscience , Annual Meeting , Nov 2007


  • Saugstad JA, Pignataro G, Lambert MJ, Farr CD, Simon RP & Lusardi TA , Role for preconditioning-induced changes in mouse brain microRNA expression as a novel mechanism underlying delayed ischemic tolerance; Society for Neuroscience , Nov 2007


  • Nankova BB, MacFabe DF, & La Gamma EF. , Short chain fatty acids regulate monoamine neurotransmission:; Society for Neuroscience , Annual Meeting , Nov 2007


  • Hofmann SL, Lu JY & Li Y. , Palmitoyl-Protein thioesterase and the molecular basis of infantile NCL; , 11th International Congress on Neuronal Ceroid Lipofuscinosis, Jul 2007


  • Frye, C.A., Paris, J.J., Chittur, S., Microarray analyses of midbrain tissues from female mated and unmated rats indicates increased expression of genes involved in steroid biosynthesis, neurogenesis, dopamine receptor, and G-protein activity.; Hudson Berkshire Society for Neuroscience Chapter, Annual Meeting , Feb 2007


  • Charizopoulou N. & Noben-Trauth K. , Transcriptome analysis of cochleae from normal and hearing impaired strains; NIDCD, Intramural Retreat , Nov 2006


  • Saugstad JA, Pignataro G, Simon RP & Lusardi T. , Regulation of mouse brain microRNAs by ischemic preconditioning; Society for Neuroscience , Oct 2006


  • Milan F, Rosenthal MJ, Bernard G, Amyloidosis of the brain and defective innate immunity in Alzheimer’s disease patients; Alzheimer's Association, The International Conference on Alzheimer's Disease and Related Disorders, Jul 2006


  • Lusardi T, Pignataro G, Simon RP, Saugstad JA , Regulation of microRNAs by ischemic preconditioning; , 71st Cold Spring Harbor Symposium: Regulatory RNAs, Jun 2006


  • Cudrici C, Zafranskaia E, Weerth S, Chen HH, Gherman A, Rus V, Raine C, Shin ML, Rus H, Effect of Complement C5 on Gene Expression Profile in Experimental Autoimmune Encephalomyelitis (EAE); American Association of Immunologists Meeting, May 2006


  • Bullock WM, Paz RD, Roberts R, Andreasen NC and Perrone-Bizzozero NI, Gene expression alterations in the cerebellum of patients with schizophrenia revealed by DNA microarray analysi; American Society Neurochemistry, Annual Meeting, Mar 2006


  • Palmer AA, Veenstra-Vander Weele J, Verbitsky M, Suresh, R, Qaadir A, Kamens HM, Belknap JK, Gilliam TC, Cook EH, Phillips TJ, de Wit H, Casein kinase 1 epsilon modulates sensitivity to stimulant drugs in both mice and humans: a translational genetic study; American College of Neuropsychopharmacology, Annual Meeting, Dec 2005


  • Ghiani CA and de Vellis J. , Nicotinic receptor agonists and antagonists present in tobacco affect cellular programs in the developing brain. ; , 4th World Assembly on Tobacco Counters Health, Dec 2005


  • Bough, K., B Hassel, J Wetherington, R Shaw, R Dingledine, Anticonvulsant mechanisms of the ketogenic diet consistent with chronic changes in energy metabolism; Society for Neuroscience, Annual Meeting, Nov 2005


  • Plosk JEi, Duman RS, Sathyanesan SN, Antidepressant-induced gene expression changes in hippocampal subfields feasibility of laser microdissection and RNA amplification; Society For Neuroscience, Annual Meeting, Nov 2005


  • Okamoto H, Newton SS, Suda S, Duman RS, Chronic antidepressant treatments up-regulate neurogenic factors in rat hippocamus: Role of WNT; Society For Neuroscience, Annual Meeting, Nov 2005


  • Girgenti MJ, Collier EF, Ploski J, Sathyanes SN, Electroconvulsive seizure increases vascular density in the hippocampal molecular layer; Society For Neuroscience, Annual , Nov 2005


  • Wang R, Zhang D, Genome-wide identification of marker genes for lower motoneurons using gene expression profiling; Society For Neuroscience, Annual Meeting, Nov 2005


  • Tanis KQ, Newton SS, Duman RS , Identification of creb-mediated changes in gene transcription following electroconvulsive seizure program; Society For Neuroscience, Annual Meeting, Nov 2005


  • Liu X, Kvetnansky R, Serova L, and Sabban E , Microarray analysis of changes in gene expression in adrenal medulla of rats exposed to single immobilization stress; Soceity For Neuroscience, Annual Meeting, Nov 2005


  • Steen PA, Pham L, Mason M, Marik S, Ma C, Lefebvre Y, Hickmott PW, Microarray analysis of the adult rat S1 forepaw/lower jaw border during cortical reorganization; Society For Neuroscience, Annual Meeting, Nov 2005


  • Black SJ, Bomze HM, Dai, HH, Skene JHP, Prolonged expression of GAP-43 and CAP-23 induces a secondary program of gene expression that partially mimics the response to axon injury; Society for Neuroscience, Annual Meeting, Nov 2005


  • Ponder CA, Kliethermes CL, Drew MR, Muller JM, Das K, Crabbe JC, Gilliam T, Palmer AA, Short-term selected lines for fear conditioning: QTL, gene expression, learning and anxiety-like behaviors; Society for Neuroscience, Annual Meeting, Nov 2005


  • Gustavsson M, Mallard C, Vannucci SJ, Wilson MA, Johnston MV, and Hagberga H, Vascular contribution to brain protection after hypoxic preconditioning in the immature rat; Society for Neuroscience, Annual Meeting, Nov 2005


  • Hendricks WP, Coons SW, Scheck AC, Ramsey KE, Stephan DA, and Preul MC, Gene Expression Profiling and Immunohistochemical Screening Establish a Novel Tool for Clinicopathological Management of Meningiomas; AANS, Jun 2005


  • Hendricks WP, Coons SW, Scheck AC, Ramsey KE, and Preul MC, Immunohistochemical Screening Based on Gene Expression Profiles Predictive of Meningioma Recurrence; null, World Federation of Neuro-Oncology and European Association for Neuro-Oncology Meeting, May 2005


  • Thrivikraman K.V. , Kinkead B, Gernert KM, Nemeroff CB, Plotsky PM, and Owens M, The Effect of Corticosterone on Diurnal Differences in Rat Dorsal Raphe Gene Expression; Society of Biological Psychiatry, Annual Meeting, May 2005


  • Hendricks WP, Coons SW, Preul MC, Ramsey KE, and Scheck AC, Global expression profiles predict meningioma recurrence and reveal novel pathways leading to aggressive phenotypes: a new clinical model of meningioma aggression; AACR, Mar 2005


  • Borges K, Shaw R and Dingledine R, Identification of potential neuroprotective genes involved in seizure preconditioning in the hippocampus; null, American Epilepsy Society Meeting, Dec 2004


  • Hendricks WP, Pfisterer WP, Nieman RA, Ramsey KE, Coons SW, Stephan DA, Scheck AC and Preul MC, Characterization of molecular, genetic, and biochemical profiles associated with meningioma progression and recurrence; Society for Neuro-Oncology, Annual Meeting, Nov 2004


  • Hendricks WP, Scheck AC, Ramsey KE, Pfisterer WP, Coons SW, Stephan DA and Preul MC, Characterization of molecular profiles associated with meningioma progression and recurrence; American Association of Neurological Surgeons, Tumors of the Central Nervous System Satellite Symposium, Oct 2004


  • Fu W, Bailey S and Toth M, Differential gene expression in the hippocampus of 5-HT1A receptor knockout mice; Society for Neuroscience, Annual Meeting, Oct 2004


  • Tourtellotte W, Whitehead J and Albert Y, Egr3: A transcriptional regulator that mediates intrafusal muscle fiber fate specification; Society for Neuroscience, Annual Meeting, Oct 2004


  • Palmer AA, Ponder CA, Das K, Gilliam TC, Examination of Putatively Genetically Correlated Traits in Mouse Lines Divergently Selected for Differences in Fear Conditioning; Society for Neuroscience, Annual Meeting, Oct 2004


  • Ghiani GA, Beltran-Parrazal L, Lelievre V, Sforza DM, Malvar J, Neman J, Cole R, Smith DJ, Charles AC, Ferchmin PA, de Vellis J, Gene Expression is differentially regulated by activation of neurotransmitter receptor in primary cortical neuronal cultures; Society For Neuroscience, Annual Meeting, Oct 2004


  • Matsushita H, Johnston MV and Wilson MA, Gene expression in neonatal mice after hypoxic-ischemia: effect of erythropoietin pretreatment; Society for Neuroscience, Annual Meeting, Oct 2004


  • Greene JG, Greenamyre JT and Dingledine R, Gene expression profile of chronic complex I inhibition in an in vitro model of Parkinson's disease; Society for Neuroscience, Annual Meeting, Oct 2004


  • Ponder CA, Das K, Gilliam TC, Palmer AA, Identification of QTL and Gene Expression Differences Using Divergent Selection for Contextual Fear Conditioning in Mice; Society for Neuroscience, Annual Meeting, Oct 2004


  • Puffenberger EG, Lince DH, Parod JM, Conway AR, Stafford PN, Donarum EA, Craig DW, Strauss KA, Dobrin SE, Dunckley T, Cardenas JF, Melmed KR, Wright CA, Morton DH, Flynn CR, and Stephan DA, Mapping of sudden infant death with dysgenesis of the testes syndrome (SIDDT) by a SNP genome scan and identification of TSPYL loss of function; American Society of Human Genetics, Annual Meeting, Oct 2004


  • Dobrin SE, Pearson J, Parod J, Lince DH, Craig, DW, Cardenas J, Rosenow C, and Stephan DA, Meta analysis of high-density SNP profiles to assess SNPs as markers for genetic mapping; American Society of Human Genetics, Annual Meeting, Oct 2004


  • Borges K, Shaw R, Greene J and Dingledine R, Microarray analysis of three hippocampal cell populations before and after seizure preconditioning; Society for Neuroscience, Annual Meeting, Oct 2004


  • Hendricks WP, Pfisterer WP, Nieman RA, Ramsey KE, Coons SW, Stephan DA, Scheck AC and Preul MC, Molecular and biochemical analyses of alanine metabolism across meningioma grade and recurrence; American Association of Neurological Surgeons, Tumors of the Central Nervous System Satellite Symposium, Oct 2004


  • Gao X and Tourtellotte W, Nerve growth factor (NGF) mediated target gene regulation in human neuroblastoma; Society for Neuroscience, Annual Meeting, Oct 2004


  • Koh S, Chung H, Wilson D, Transcriptional regulation of neuropeptides in rat hippocampus after kainic acid-induced seizures; Society for Neuroscience, Annual Meeting, Oct 2004


  • Dunckley T, Beach TG, Ramsey KE, Caselli RJ, Reiman EM, Stanley M, Sue L, Rogers J, and Stephan DA, Mechanism of neurofibrillary tangle-induced neuronal degeneration leading to Alzheimer's Dementia; Alzheimer's Association, 9th International Conference on Alzheimer's Disease and Related Disorders, Jul 2004


  • Palmer A.A., Verbitsky M, Suresh R, Kamens HM, Reed CL., Li N, Burkhart-Kasch S, McKinnon CS, Belknap JK, Gilliam TC, Phillips TJ, Short-Term Selection Identifies a cis-Acting Expression QTL for Casein Kinase 1 Epsilon (Csnk1e) that May Influence Sensitivity to Methamphetamine; Complex Trait Consortium, Annual Meeting, Jul 2004


  • Pfisterer WP, Hendricks WP, Barnhard M, Coons SW, Scheck AC, Nieman RA, and Preul MC, 1H Spectroscopic Analysis of Meningiomas Demonstrates Specific Metabolic Changes Correlating with More Aggressive Clinical Features; American Association of Neurological Surgeons (AANS), May 2004


  • Pfisterer WP, Hank NC, Hendricks WP, Pueschel J, Coons SW, Preul MC, and Scheck AC, Diagnostic and/or Prognostic Significance of Genetic Regional Heterogeneity in Meningiomas; American Association of Neurological Surgeons (AANS), May 2004


  • Ghiani CA, Lelievre V, Sforza DM, Malvar J, Cole R, Smith DJ, Ferchmin PA, and de Vellis J, Regulation of Gene Expression by NMDA and Nicotine in Primary Cortical Neuronal Cultures; , First ISN Special Neurochemistry Conference, May 2004


  • Puffenberger EG, Lince DH, Parod JM, Conway AR, Stafford PN, Donarum EA, Craig DW, Strauss KA, Dobrin SE, Dunckley T, Cardenas JF, Melmed KR, Wright CA, Morton DH, Flynn CR, and Stephan DA, A high density SNP genome scan identifies a TSPYL mutation in swarey syndrome; Human Genome Organization, Annual Meeting, Apr 2004


  • Hendricks WP, Pfisterer WP, Nieman RA, Hank NC, Ramsey KE, Stephan DA, Preul MC and Scheck AC, Characterization of molecular, genetic, and biochemical profiles associated with meningioma progression and recurrence; American Association for Cancer Research, Annual Meeting, Mar 2004


  • Koh S, Xia H, Chung H, Mahadevia A, and Young AL, Environmental Enrichment reverses the impaired exploratory behavior and altered gene expression induced by early-life seizures; null, Epilepsia, Jan 2004


  • Koh S, Kruegel BR, Elliott RC and Chung H, Acute dendritic swelling, loss of dendritic complexity and alterations in gene expression induced by early-life seizures; Society for Neuroscience, Annual Meeting, Nov 2003


  • Nelson SF, et al (NINDS/NIMH Consortium), Cross-platform analysis; American Society of Human Genetics, Annual Meeting, Nov 2003


  • Greene JG, Dingledine R and Greenamyre JT, Gene expression profiling of midbrain dopamine neurons using laser capture microscopy and microarray analysis; Society for Neuroscience, Annual Meeting, Nov 2003


  • Bough KJ, Greene JG and Dingledine RJ, Ketogenic diet-induced changes in gene expression; Society for Neuroscience, Annual Meeting, Nov 2003


  • Donarum E, Stephan DA, Snead OC, Gupta M, and Gibson KM, Microarray-based pathogenesis modeling of murine succinate semialdehyde dehydrogenase (SSADH) deficiency; Society for Neuroscience, Annual Meeting, Nov 2003


  • Ghiani CA, Sforza DM, Valenzuela LA, Smith DJ, Ferchmin PA, and de Vellis J, Regulation of Gene Expression by NMDA and Nicotine in Cortical Neurons; Specialized Centers in Neuroscience Excellence in Neuroscience at Minority institutions, Annural Conference, May 2003


  • Koh S, Elliott RC, Chung H and Pearson, KE, Microarray-based expression profiling of genes regulated by early-life seizures; null, Epilepsia, Jan 2003


  • Donarum EA, Hautaniemi S, Graff J, Cheng Y, Mousses S, Kallioniemi O-P, Natale J, and Stephan DA, Novel developmentally regulated gene circuits in murine brain development: a template for understanding dysfunction and tumorigenesis; American Society of Human Genetics, Annual Meeting, Oct 2002


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Talks Return to Top
  • Kowa H, Matsui T, Bouzou B, Clark T, Freeman S, Frosch M, & Hyman B. , Complement pathways are upregulated in angular gyrus of PPA cases; International conference on Alzheimer's disease, Jul 2008


  • Frye C. , Membrane actions of progestins at dopamine Type 1-like and GABAA receptors depend upon initiation of signal transduction pathways; 5th International Meeting: Rapid Responses (Dublin, Ireland), Sep 2007


  • A. Palmer, Identifying genes that control sensitivity to methamphetamine in mouse and man: A combined QTL/eQTL approach; University of Chicago, Committee on Neurobiology Seminar Series, Dec 2006


  • A. Palmer, Translational Genetic Strategy for Identifying Genes for Sensitivity to Stimulant Drugs in Mouse and Man: A Combined QTL/eQTL Approach; University of Chicago, NIDA Training Grant, Dec 2006


  • A. Palmer, Translational genetic strategy for identifying genes for initial sensitivity to stimulants drugs: a combined QTL/eQTL approach; Rosalind Franklin University of Medicine and, Dec 2006


  • A. Arnold, Dosage compensation in birds versus mammals.; Society for Neuroscience; Atlanta, GA, Oct 2006


  • R. Dingledine, Biomarkers of epileptogenesis; NINDS Workshop, Washington DC, Sep 2006


  • R. Dingledine, Microarray studies of epilepsy; Gordon Conference, Aug 2006


  • E. Sabban, Transcriptional Expression Profiling of the Stressed Adrenal Medulla; Thirteen International Symposium on Chromaffin Cell Biology, Pucon, Chile, Jan 2006


  • A. Palmer, Behavioral genetic studies of methamphetamine sensitivity and fear learning in mice: a QTL/eQTL approach to finding candidate genes; University of Chicago, Department of Evolution and Ecology, Dec 2005


  • A. Palmer, Casein kinase 1 epsilon modulates sensitivity to stimulant drugs in both mice and humans: a translational genetic study; American College of Neuropsychopharmacology 44th annual meeting, Waikoloa, Hawaii, Dec 2005


  • A. Palmer, Integration of QTL mapping and gene-expression profiling in the search for behaviorally-relevant genes; Mount Sinai School of Medical, Department of Human Genetics, Dec 2005


  • A. Palmer, Integration of selective breeding, QTL mapping and gene-expression profiling in the search for fear learning genes in mice; New York University, Center for Neural Science, Dec 2005


  • C. Wesley, Notch Auto-Regulation and Neurogenesis in Drosophila; Rutgers University, New Jersey, Dec 2005


  • A. Palmer, Using selective breeding to identify candidate genes for methamphetamine-sensitivity and fear-related behavior; University of Cincinnati, Department of Psychiatry, Dec 2005


  • A. Palmer, Using selective breeding to identify genes controlling variability in methamphetamine and fear-related behaviors; Virginia Commonwealth University, Department of Psychiatry, Dec 2005


  • E. Sabban, Stress and Illness: A Molecular Biologist's View; McLean Hospital, Harvard Medical School, Neuroscience Seminar Series, Cambridge, MA, Sep 2005


  • G. Tosini, Gene Expression in the Retina and Pineal; Gordon Research Conference on Pineal Cell Biology; Oxford, UK, Aug 2005


  • A. Palmer, Short-term selective breeding for fear learning; Groningen, The Netherlands, Jun 2005


  • E. Sabban, Mechanism in the Regulation of Gene Expression for Dopamine Biosynthesis; Department of Neurology, Juntendo University School of Medicine, Tokyo, Japan, May 2005


  • E. Sabban, Stress: Molecular Neurobiological Mechanisms; Fujita Health University, Toyoake, Aichi, Japan, May 2005


  • E. Sabban, Stress: A Molecular Neurobiological Perspective ; Department of Cell Biology and Neuroscience Seminar Series, Rutgers University, Piscataway, New Jersey, Jan 2005


  • D. Stephan; Cincinnati, OH, NF1 Microarray Consortium Conference, Dec 2004


  • A. Palmer, Use of Selective Breeding to Study Complex Traits in Mice; Columbia University, Sackler Institute for Developmental Psychobiology, Dec 2004


  • A. Palmer, Using selective breeding to identify genes controlling variability in complex behavioral traits; University of Chicago, Department of Human, Dec 2004


  • D. Stephan; University of Arizona, Phoenix, AZ, Arizona Cancer Center Symposium, Nov 2004


  • D. Stephan; NIH, NINDS Council Meeting, Sep 2004


  • D. Stephan; Denver, CO, Mountain States Genetics Network, Jul 2004


  • S. Nelson; Washington, DC, NINDS GENSAT Meeting, May 2004


  • D. Stephan; Washington, DC, Affymetrix Partners Conference, May 2004


  • D. Craig, Autism: Genetics and Neurobiology; Barrow Neurological Institute, Phoenix, AZ, May 2004


  • Ghiani CA, Regulation of Gene Expression by NMDA and Nicotine in Primary Cortical Neuronal Cultures.; Department of Experimental Biology, University of Cagliari Cagliari, Italy., May 2004


  • D. Stephan; Berlin, Germany, HUGO/HGM 2004, Apr 2004


  • D. Stephan, NINDS Biomarkers in Multiple Sclerosis; Washington, DC, Apr 2004


  • J. Trent, Gene Discovery in Complex Disorders; Laguna Beach, CA, Mar 2004


  • D. Stephan; Barrow Neurological Institute, Grand Rounds, Phoenix, AZ, Feb 2004


  • A. Palmer, Gene Expression in Mouse Lines Divergently Selected for Response to Methamphetamine; Palisades, NY, Dec 2003


  • D. Stephan; San Diego, CA, NINDS GENSAT Advisory Meeting, Oct 2003


  • D. Stephan; Washington, DC, NINDS GENSAT Advisory Meeting, Oct 2003


  • Seth Debrin; San Diego, CA, Affymetrix Annual User Group Meeting, May 2003


  • D. Stephan; Southwest Autism Research and Resource Center, Phoenix, Arizona, Apr 2003


  • D. Stephan, Microarrays In Epilepsy; NIH, Oct 2002


  • A. Palmer, Use of genetic selection and gene expression analysis to identify genes and behaviors associated with fear learning in mice; Gordon Research Conference "Genes and Behavior," Ventura, CA, Feb 0006


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Other Articles of Interest Return to Top
  • Ahmed F, Brown KM, Stephan DA, Morrison J, Johnson E and Tomarev SI, Microarray analysis of changes on mRNA levels in the rat retina after experimental elevation of intraocular pressure; Invest Ophthalmol Vis Scie , 2004, 4; 45:1247-1258


  • Almon RR, DuBois DC, Pearson KE, Stephan DA and Jusko WJ., Gene arrays and temporal patterns of drug response: corticosteroid effects on rat liver. ; Funct. Integr. Genomics, 2003, 4; 3:171-9  View Online


  • Beauheim CC, Wymore F, Nitzberg M, Zachariah ZK, Jin H, Skene JH, Ball CA, Sherlock G., OntologyWidget – a reusable, embeddable widget for easily locating ontology terms; BMC Bioinformatics, 2007; 8:338  View Online


  • Carlson M, Zhang B, Fang Z, Mischel PS, Horvath S, & Nelson SF. , Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks; BMC Genomics, 2006, 40; 7  View Online


  • Daluiski A, Pearson KE, Shi Y, Bostrom MP, Nestor BJ, Martin G, Hotchkiss R, and Stephan DA, Cyclooxygenase-2 (COX-2) Inhibitors in Human Skeletal Fracture Healing; Orthopedics, 2006, 3; 29:259-61  View Online


  • Day A, Carlson MRJ, Dong J, O'Connor BD, Nelson SF, Celsius: a community resource for Affymetrix microarray data; Genome Biology, 2007, R112; 8  View Online


  • Horvath S, Zhang B, Carlson M, Lu KV, Zhu S, Felciano RM, Laurance MF, Zhao W, Qi S, Chen Z, Lee Y, Scheck AC, Liau LM, Wu H, Geschwind DH, Febbo PG, Kornblum HI, Cloughesy TF, Nelson SF, Mischel PS., Analysis of oncogenic signaling networks in glioblastoma identifies ASPM as a molecular target; PNAS, 2006, 46; 103:17402-7  View Online


  • Khatua S, Peterson KM, Brown KM, Lawlor C, Santi MR, LaFleur B, Dressman D, Stephan DA, MacDonald TJ, Overexpression of the EGFR/FKBP12/HIF-2 alpha pathway identified in childhood astrocytomas by angiogenesis gene profiling; Cancer Res, 2003; 63:1865-1870  View Online


  • Laule O, Hirsch-Hoffmann M, Hruz T, Gruissem W, & Zimmermann P. , Web-based analysis of the mouse transcriptome using Genevestigator; BMC Bioinformatics, 2006, 311; 7  View Online


  • Leil TA, Ossadtchi A, Nichols TE, Leahy RM and Smith DJ, Genes regulated by learning in the hippocampus; J Neurosci Res., 2003; 71:763-768  View Online


  • MacDonald TJ, Brown KM, LaFleur B, Peterson K, Lawlor C, Chen Y, Packer RJ, Cogen P, Stephan DA, Expression Profiling of medulloblastoma: PDGFRA and the RAS/MAPK pathway as therapeutic targets for metastatic disease; Nature Genetics, 2001; 29:143-152


  • Maddukuri A, Liang WS, Teslovich TM, de la Fuente C, Seelamgari A, Kehn K, Baylor S, Hautaniemi S, Pumfery A, Stephan DA, and Kashanchi F, Therapeutic Targets for HIV-1 Infection in the Host Proteome; Retrovirology, 2005


  • Magdaleno S, Jensen P, Brumwell CL, Seal A, Lehman K, et al., BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System; PLoS Biol, 2006, 4; 4


  • Mintz MB, Sowers R, Brown KM, Hilmer SC, Mazza B, Huvos AG, Meyers PA, Lafleur B, McDonough WS, Henry MM, Ramsey KE, Antonescu CR, Chen W, Healey JH, Daluski A, Berens ME, Macdonald TJ, Gorlick R, Stephan DA, An expression signature classifies chemotherapy-resistant pediatric osteosarcoma; Cancer Res, 2005, 5; 65:1748-54  View Online


  • Mischel PS, Shai R, Shi T, Horvath S, Lu KV, Choe G, Seligson D, Kremen TJ, Palotie A, Liau LM, Cloughesy TF and Nelson SF, Identification of molecular subtypes of glioblastoma by gene expression Profiling; Oncogene, 2003; 22:2361-2373  View Online


  • Pang H & Zhao H., Building pathway clusters from Random Forests classification using class votes.; BMC Bioinformatics, 2008, 87; 9  View Online


  • Pritchard DE, Ceryak S, Ramsey KE, O'Brien TJ, Ha L, Fornsaglio JL, Stephan DA, Patierno SR, Resistance to apoptosis, increased growth potential, and altered gene expression in cells that survived genotoxic hexavalent chromium [Cr(V1)] exposure; Mol Cell Biochem, 2005, 1-2; 279:169-81  View Online


  • Shai R, Shi T, Kremen TJ, Horvath S, Liau LM, Cloughesy TF, Mischel PS and Nelson SF, Gene expression profiling identifies molecular subtypes of gliomas; Oncogene, 2003; 00:1-6  View Online


  • Shurtleff D, Rutter JL, Ramsey KE, Craig DW, and Stephan DA. , The nuts and bolts of gene array technology and its applications to drug abuse research.; Drug and Alcohol Dependence., 2007, 1; 91:102-6


  • Tezak Z, Hoffman EP, Lutz JL, Fedczyna TO, Stephan D, Bremer EG, Krasnoselska-Riz I, Kumar A, Pachman LM, Gene expression profiling in DQA1*0501+ children with untreated dermatomyositis: a novel model of pathogenesis; J Immunology, 2002; 168:4154-4163


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Other Articles of Interest in Press Return to Top
  • No articles are in press at this time.


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Other Articles of Interest in Preparation Return to Top
  • No articles are in preparation at this time.


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